sorry if question has come before ask if knows goes each of arguments in maxent()
dismo package? have searched various r forum sites , r page couldn't understand how put in arguments. have sample of data frame predictor variables here
library(dismo) system.file("java", package="dismo") bio_14 bio_19 bio_3 bio_5 forest_cover 9 125 67 329 1 9 125 67 329 1 9 124 68 329 3 10 126 67 319 3
each row either background or presence point. don't understand after goes p , arguments in maxent()
formula. p argument contain x , y coordinates , 3rd column indicating 1 (presence) , 0 (absence)? or column containing 1s , 0s go argument instead? forest_cover
categorical variable.
datam<-read.csv("maxent dataset.csv", header=t) datam<-data.frame(datam) parg<-read.csv("maxent p arg.csv", header=t) aarg<-read.csv("maxent arg.csv", header=t) datam[,'forest_cover'] = as.factor(datam[,'forest_cover']) #p x y 328206.7075 1257255.387 328759.7075 1256632.385 323102.7012 1256404.391 323029.7117 1267187.402 #a pb 1 1 1 0 #final code maxent1<-maxent(x=datam, p=parg, a=aarg, factors='forest_cover') error in maxent(x = datam, p = parg, = aarg, factors = "forest_cover") : unused arguments (x = datam, p = parg, = aarg, factors = "forest_cover")
please tell me if should moving of stuff around , if in right data frames. in advance
ran maxent in r in following way
maxent(predictors, parg, aarg)
where
predictors: stack of environmental variables
parg: coordinates of presence localities (x , y coordinates in separate columns)
aarg: coordinates of background points (x , y coordinates in separate columns)
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